cd6b5a1311e3d2865dd40b554f15e40c *DESCRIPTION
43fede49d7909e409e4b8cd4b517112b *NAMESPACE
32c21e408ebfcd9ff22d814e113a5f20 *R/FHatCovariances.R
7cb71ea749e13f059eb26e126b9b2459 *R/GibbsCovariances.R
d8269293339e83a773fd183565613708 *R/ISPHelpers.R
06d3f0841b9e27e6fc18fda125b5af04 *R/MarkovChains.R
e62bd9fb4fd02d463f09da4644a0129a *R/ag.test.R
2dca072155880c687f3032d0086d6b50 *R/agct.test.R
8903d3e82c60ba953ba82ad2c4a5e757 *R/auxtests.R
cf91a4daa110c11902cdcb472fec1ad0 *R/chargaff.gibbs.test.R
fdcb57cdb486278ef469ce629c8e6273 *R/chargaff0.test.R
72cd70a997e1dea882a619192a28c75d *R/chargaff1.test.R
37d86d82bde1fce77b1ca4f19ba38171 *R/chargaff2.test.R
4a6bf9cb0516a99cf638f449edcccc21 *R/complement.R
ed66c1a6b7899fbc9918ab102e58866f *R/counting.R
e4fad11d1b2f3b00ba499bc56a58816e *R/diid.test.R
ebb9c805c31f8764786b03368ef28006 *R/disambiguate.R
73ee013a615064caee78ecba28f1f57e *R/hooks.R
0560a70eef0e6eb4f3b3668f83b9c840 *R/markov.test.R
2337761cdc68b8de6fd23215a3b16101 *R/oligoCorr.R
33234f4302d90065b495b011fd869633 *R/print.R
8f9b79f452308517a12e0c6778f4b879 *R/profile.R
4d0764c8e7c83bc4af548bc5a874613e *R/randmat.R
2eb5e0f7107a75bd483187ff1366bcfb *R/reverseComplement.R
bc6d679be537b91d5a08b4623109fb91 *R/sysdata.rda
558f069c6d161e231811b14d1bd5c86d *build/partial.rdb
2ac532068c08bd745abd9252277243c3 *cleanup
b581d7947f5410d40c8a67aa4810ed3e *configure
8bd4ae346b2b54083acdd2c689a0841a *configure.ac
2f60de2e27c93ae134d2a18a74a1f1cf *data/datalist
33b5382c144e8cb24065038bae33d6f4 *data/nanoarchaeum.rda
39e231aed824a0acbf4311c41d21cf9a *data/pieris.rda
8b1ee4af99e6fefe3a40cd00dd6ed913 *inst/CITATION
efcc1a76b7f5b038bd8cd9f544706c75 *inst/NEWS.Rd
a791cbf87fd93d88cbdae2b0bbdc56ff *man/ag.test.Rd
9a6287f1aca5274f138facb2a3253e0f *man/agct.test.Rd
674b1e910fe3363c6bd455d3422480d7 *man/array2vector.Rd
d4786980d71e3b3b7e9b1c67efb3bff3 *man/chargaff.gibbs.test.Rd
602001ad1ddab24c379168b79fe9d214 *man/chargaff0.test.Rd
a59ccb28f8c6d297eec3061805b3adbf *man/chargaff1.test.Rd
f061988799fdf6b315c9760d40a62a55 *man/chargaff2.test.Rd
be93f2b173dff82161fca3bc27b9ed25 *man/chisq.unif.test.Rd
1e506a50b27ae0e1741daacf896031a5 *man/complement.Rd
45518a30b87a85b6a031437fec0be56e *man/cylinder.counts.Rd
423391a24427853c69ec2da39edf8f08 *man/diffsign.test.Rd
29d5dd0572ba3f9fd12ecff911c46288 *man/diid.disturbance.Rd
ad2f9651687241eece3390d6605f8ff6 *man/diid.test.Rd
f116d56cf0e56fe9f844a833e60ccd98 *man/disambiguate.Rd
343c55fbf96f9ba76d98cc7b49e0343d *man/estimateMarkovChain.Rd
7a1c98f2309e01fc1d9726508cba1165 *man/ks.unif.test.Rd
39f02dc41fe5bc1d5eda35d25678cfef *man/lb.test.Rd
963a2eec90c98b8b14f0f3cb3830d174 *man/markov.disturbance.Rd
23710219ac7d3a392e7d0823691d2b2f *man/markov.test.Rd
0e6cd3cfbd954da7bd3405a952abd4cb *man/nanoarchaeum.Rd
9ba9c5af80492eb3567061b22b1fb3c5 *man/oligoProfile.Rd
c0bbe41267dcd3277a20a3404298e55d *man/pair.counts.Rd
88366e8ade6f3097da082f8776667631 *man/pieris.Rd
da7f8541e1871cc0eda3fe73a5a55891 *man/quadruple.counts.Rd
6a1a596e5a30dd79db347f7b2dbf2494 *man/rank.test.Rd
9369e86e66dda4822ad6149a8d2af6ab *man/rcspr2mat.Rd
ad32f22be88359f1a804ed8f1bd5aceb *man/reverseComplement.Rd
83f57619b51bf74d04a18e0be7873a7b *man/rstochmat.Rd
54f473f7288335fdcb1c03f482e8e957 *man/rstochvec.Rd
215cdaf744c465b3780d7a8769a30eea *man/simulateMarkovChain.Rd
b4456b44b039776353b15a08f908de88 *man/spgs-package.Rd
0252f44dab0e4d657940783ec1ccb23f *man/triple.counts.Rd
a1a6f7313b61126b39a307ca85c2463a *man/turningpoint.test.Rd
078008f643abace203aca4e9c9173dde *src/Makevars.in
efc26eccd6eb0cae082f3c9e2027082c *src/Makevars.win
4f322d898867f5054dd17a1259d0d84a *src/spgs-win.def
ee6e7f9cc3b1742fd7f09ea29d8ce29b *src/spgs.c
27de5a5f8259b67be0789192b567db1f *src/spgs.h
95003eba2e8bfa6c613eb5ad6e8a52e6 *src/uint64.h
eca03e500ba0b94347a6d465353118c2 *tests/countingTest.R
dfb85d062f97e1ca673079bc0d8a12c6 *tests/countingTest.Rout.savefile
9a900203e38c8167d52e586dedb41b05 *tests/profileTest.R
730d0ca105b205c135705ca4657a6de4 *tests/profileTest.Rout.savefile
