c9b0547fd1a1d4618c7e9ea3c07e8e16 *DESCRIPTION
fb1965b651fe88c0bdc23ec7148ee7ee *NAMESPACE
82ec77d533c0718a89dfe6e8afd82ee2 *R/anovir-package.R
958c097df399195442591037e6263edb *R/data_descriptions.R
13fc252bdd83cf0317e60f056db0f989 *R/main.R
eb61ff989b382dd7fd4a1f7e7911ba08 *R/nll_frailty_correlated.R
59f7fccd46975d5dce844b7dc810cd2c *R/nll_functions.R
c8d17a9a53607e1547946bd4419fe12f *R/nll_recovery.R
8a81f51e36a5d4fef2dcc720f7a10baa *R/nll_recovery_II.R
223f76a9a6080a3f24eff1ce7cb21323 *R/play_file.R
d65baeb57ec1bb537e8b4141a07f1f7b *R/private_functions.R
4c84dca7f9be3237e3906fc32768b91b *build/vignette.rds
2aa8a61b9cbab57019a84ce0da5f4c52 *data/data_blanford.rda
1e624d9452474aeb7ed6a076044de57e *data/data_lorenz.rda
4657f62228c04671f2536a83d6259379 *data/data_parker.rda
048f49fb0af5438d74e0f7e8499d16bf *data/recovery_data.rda
f808381ba3075af280d4397ce9054224 *data/recovery_data_II.rda
72194b38de86555f2675a5039b5b47e2 *inst/doc/Introduction.R
77c34d69f831ff5debfc2f44cd1407c5 *inst/doc/Introduction.Rmd
da81090359c633446b68bbf050586c17 *inst/doc/Introduction.html
bf2bc868c7915f551b0543ceb3fe5e8d *inst/doc/confidence_intervals.R
9ab993fc09af65f394c5e53b0e620741 *inst/doc/confidence_intervals.Rmd
a988f6d3767152cbdba895e1d500159a *inst/doc/confidence_intervals.html
fe0816f0b08cc462544a961de1d378cd *inst/doc/data_format.R
f5d482f71971e3cd40e6878fa1479f7a *inst/doc/data_format.Rmd
a51a433d658ddff4b26cf3878d65154e *inst/doc/data_format.html
3c9e2d06e8560272e30c98b0c827478b *inst/doc/nll_functions.R
78a483334a9c9ba1830ace3939965ec5 *inst/doc/nll_functions.Rmd
a5082dea75181e707fe065dab99f2e3f *inst/doc/nll_functions.html
76581f1a7ef3d026bbd3fb41eca77c23 *inst/doc/nll_functions_modifying.R
fb712ca235832c9cc913c1896adaf67f *inst/doc/nll_functions_modifying.Rmd
fc28328eef5e45acc2c1f6cafc4e1f6f *inst/doc/nll_functions_modifying.html
95d620391ec4d60c1bdb8a65658825d0 *inst/doc/nll_functions_using.R
ed7c6e004d04eb2a4c62c6156c118d40 *inst/doc/nll_functions_using.Rmd
2704e7645c7cec941149f7bd1bc23ca3 *inst/doc/nll_functions_using.html
72194b38de86555f2675a5039b5b47e2 *inst/doc/probability_distributions.R
30d315b4075e1069c70a8759a4a412c2 *inst/doc/probability_distributions.Rmd
ec7b495a5ba23458cf8baa569ea7008d *inst/doc/probability_distributions.html
2825f1260a96614a313470bd43f13056 *inst/doc/starting_values.R
f97d8c668652bc1d9df9e862ac39a265 *inst/doc/starting_values.Rmd
9872c6c4642c3b691c76974fb2565929 *inst/doc/starting_values.html
05679796341a176a9a3dcf56980eb70c *inst/doc/the_exponential_distribution.R
3bd04fcc659c813ab8ddf1458f4d58ea *inst/doc/the_exponential_distribution.Rmd
48dd235ee17af38b82438a4bb9516f3b *inst/doc/the_exponential_distribution.html
816abab3a6bc24cdc2b319f8e3492964 *inst/doc/worked_examples_I.R
b5a253f872023f38dc628f350523704a *inst/doc/worked_examples_I.Rmd
ce54b8082b166061a1883bc1ff41b15b *inst/doc/worked_examples_I.html
b41db2393fb954fc9b04b0074c0e736a *inst/doc/worked_examples_II.R
666060c9edbbd42721990f9333bad029 *inst/doc/worked_examples_II.Rmd
b1e7e4cab47ab2f39fd89dae2569303b *inst/doc/worked_examples_II.html
b42231a1210c8e844613719b7ae9b3d7 *inst/extdata/Parker_2014_Evolution_ExpData.csv
ebd325ae4b0a10f38c612096f4746265 *inst/extdata/blanford_data_raw.txt
96feb228af67d120fd2c5e28e27f54d2 *inst/extdata/data1.EvolApplic.txt
015bd5f23cd5e46ddc13b5d63efe201b *inst/extdata/data_recovery.txt
3e0a42e63ce7afd0b62a4585cf308ec3 *inst/extdata/data_recovery_II.txt
1346f8f09c16a2b78d1c59aa0d56a0ed *inst/extdata/ex_blanford_data_raw.txt
e35a2c8c45e66565fb63fd2c7bb57497 *man/anovir-package.Rd
7a59524bec1ce9a8dbdc1d99e4bf7e52 *man/av_long_infected.Rd
1b79023fed3a88409b977bbe8425192d *man/av_long_uninfected.Rd
dc0b47c28eeb217f7a1004ac07145823 *man/check_data.Rd
5b7bfbe3980aae3c07d9b3b1acb6a650 *man/conf_ints_virulence.Rd
5907e95ff4c570906b59986ed9fbacb7 *man/data_blanford.Rd
bbd7fbb575ccb548b79b850a151034fc *man/data_lorenz.Rd
45a5a7e40f8f8f6cc0bcc087eaeb3853 *man/data_parker.Rd
95b714733ea84928d62d584e521091e4 *man/etd_infected.Rd
472d7082814f40f6aa701941f81dbca7 *man/etd_uninfected.Rd
9618058436d27640c3ecc7d63ee984cf *man/nll_basic.Rd
d628e190242298e3b2df2eea407a45c4 *man/nll_basic_logscale.Rd
2c64903dcb49b8a6cb7c46b0b9125c41 *man/nll_controls.Rd
1aa296ff165fae157e1aacbe94baac70 *man/nll_exposed_infected.Rd
c5dd9922db9104b1f01e916ddf37454d *man/nll_frailty.Rd
779e9d824a326a2a661eda17fc27714a *man/nll_frailty_correlated.Rd
f9c217dafe6d52f140adf85455742ebd *man/nll_frailty_logscale.Rd
56e66863033879c85371d148bbf37021 *man/nll_frailty_shared.Rd
dd21174941b967df2b9ded1f7c3bc108 *man/nll_proportional_virulence.Rd
8d8ea81d030086388409fcd7458ef0f5 *man/nll_recovery.Rd
fed0dc0f94182d6dffcedad4bd1b3534 *man/nll_recovery_II.Rd
546e113434ab6baf03fef7f16f2d4f80 *man/nll_two_inf_subpops_obs.Rd
2fccd1ba3a4641c2ddb398356d712f15 *man/nll_two_inf_subpops_unobs.Rd
0045d2b28586e1f28de5bd6468546fb8 *man/recovery_data.Rd
6e9df3f65949635aba4f1e5d322648ee *man/recovery_data_II.Rd
acab1a89051c59dbf0b1c81cc8aba26e *man/sim_data_nll_basic.Rd
ce3aa4cd553e3b0e78ab7966786d65dd *tests/testthat.R
8d5e1a5835b274d084fdf51b5f9f834c *tests/testthat/test_main_funcs_numerical_output.R
77c34d69f831ff5debfc2f44cd1407c5 *vignettes/Introduction.Rmd
9ab993fc09af65f394c5e53b0e620741 *vignettes/confidence_intervals.Rmd
f5d482f71971e3cd40e6878fa1479f7a *vignettes/data_format.Rmd
c2c89557434fa1eec5106b1485b60876 *vignettes/nature.csl
78a483334a9c9ba1830ace3939965ec5 *vignettes/nll_functions.Rmd
fb712ca235832c9cc913c1896adaf67f *vignettes/nll_functions_modifying.Rmd
ed7c6e004d04eb2a4c62c6156c118d40 *vignettes/nll_functions_using.Rmd
30d315b4075e1069c70a8759a4a412c2 *vignettes/probability_distributions.Rmd
ec242c74be52fe6b12d63207d2404540 *vignettes/proc_b.csl
626a2996cc637534d068e62550d31310 *vignettes/references.bib
f97d8c668652bc1d9df9e862ac39a265 *vignettes/starting_values.Rmd
3bd04fcc659c813ab8ddf1458f4d58ea *vignettes/the_exponential_distribution.Rmd
b5a253f872023f38dc628f350523704a *vignettes/worked_examples_I.Rmd
666060c9edbbd42721990f9333bad029 *vignettes/worked_examples_II.Rmd
