SpatialPlot             Spatial plots of meta data
bin                     Subfunction of bin_metadata() for
                        expression/positional binning
bin_metadata            Spatio-molecular binning of relative expression
                        intensities
center_rm               Center expression intensities
clone_so                Add clone information to meta data of seurat
                        object and bin the beads
cnv_heatmap             Plot CNV scores on a heat map
dat_to_long             Convert data to long format and add in metadata
find_cluster_markers    Find and plot top n DEGs per cluster
find_go_terms           Find and plot top n GO-enriched terms per
                        cluster
get_num_clust           Find optimal number of clusters
long_to_bin             Convert to wide bin x genes + metadata format
make_seurat_annot       Creation of Seurat object
make_so_bin             Make a binned version of a Seurat object
mean_cnv_plot           Plot mean CNV scores per bin and per chromosome
mode                    Subfunction of long_to_bin() that finds mode of
                        vector/column
plot_clones             Plot cluster/clone information
prep                    Infercnv-based preparation of relative gene
                        expression intensities
prep_cnv_dat            Prepare data for CNV heat map
quantile_plot           Plot CNV score quantiles per bin and per
                        chromosome
ref_adj                 Adjust for Reference (Normal) Beads
run_enrichr             Subfunction to get significantly enriched GO
                        terms given a set of signfiicant beads and
                        genes
run_slide_cna           Run SlideCNA workflow
scale_nUMI              Scale for nUMI (UMI Count) to generate CNV
                        scores
scalefit                Subfunction for scale_nUMI that normalizes a
                        given bin for UMI count and centers the mean
                        CNV score at 1
weight_rollmean         Expressional smoothing along a chromosome using
                        a weighted pyramidal moving average
weight_rollmean_sub     Subfunction of weight_rollmean
